Abstract
Web resources are the archival repository for data and also a research accelerator tool for global community, economizing cost of data along with the advantage of rapidity, and ease of accessibility. Recently, the mango genome has been sequenced but very limited web genomic resources of this crop are available. This chapter covers mango web genomic resources under four sub-heads, viz., linkage map based, whole genome based, transcriptome based and SNP marker based. Linkage Map genomic resource describes how two distinct varieties, i.e., Jin-Hwang and Irwin have been used to make the very first high-density genetic map of mango. This is based on 156,368 polymorphic specific-locus amplified fragments (SLAFs) with total length of 3,148.28 cM and 20 linkage groups with an average marker distance of < 0.50 cM. Whole genome-based genomic resources covers latest whole genome sequence (WGS) data accessibility at NCBI (BioProject: PRJNA487154). It also provides INSDC ID of all 12 chromosome for download. Transcriptome-based genomic resources describe existing genomic resource MGdb based on four mango varieties, viz., langra (Pakistan), zill (China), shelly (Israel), and kent (Mexico). This section also tabulates transcriptome resources available in GenBank with varieties, types/treatment of tissues, Bioproject number with country and organizational details. The last section of this chapter describes how such web genomic resources can be used for DNA-based varietal signature supplementing distinctness, uniformity and stability (DUS) test, quantitative trait locus (QTL) detection, gene discovery, variety improvement for better biotic and abiotic stresses management, traceability, adulteration issues in mango product or origin or protection in terms of intellectual property (IP) of geographical indication (GI) law. More such resources are warranted not only for knowledge discovery but also for better productivity and profitability of mango growers with better consumer interest protection.
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Jaiswal, S. et al. (2021). Mango Genomic Resources and Databases. In: Kole, C. (eds) The Mango Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-030-47829-2_13
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DOI: https://doi.org/10.1007/978-3-030-47829-2_13
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